PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016433590.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family C2H2
Protein Properties Length: 542aa    MW: 58889.8 Da    PI: 8.5978
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016433590.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H217.11.6e-05100122123
                     EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                     ++C++C+k F r  nL+ H r H
  XP_016433590.1 100 FVCEICNKGFQRDQNLQLHRRGH 122
                     89*******************88 PP

2zf-C2H212.60.00041176198123
                     EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                     +kC++C+k +  +s+ k H +t+
  XP_016433590.1 176 WKCEKCSKKYAVQSDWKAHSKTC 198
                     58*****************9998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.601.8E-599122IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576671.66E-699122No hitNo description
PROSITE profilePS5015710.949100122IPR007087Zinc finger, C2H2
SMARTSM003550.017100122IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280102122IPR007087Zinc finger, C2H2
SMARTSM00355210141171IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.603.8E-4164197IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576671.66E-6171196No hitNo description
SMARTSM00355140176196IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 542 aa     Download sequence    Send to blast
MIKGFMNQQN QPVVVEENMS NLTSASGEAA SVSSCNRNDN NNNNTITGGI YPPQYNFAPP  60
NQQVQAQHQI KKKRNQPGNP DPGAEVIALS PKTLMATNRF VCEICNKGFQ RDQNLQLHRR  120
GHNLPWKLKQ RTSKEIRKKV YVCPEPSCLH HDPSRALGDL TGIKKHFCRK HGEKKWKCEK  180
CSKKYAVQSD WKAHSKTCGT KEYRCDCGTL FSRRDSFITH RAFCDALAEE TARAITGDPI  240
LPSQTASSSH MNLQFHPSQF NSHEFPATFS LKKEQQTGFN LRPEIPPWLM TCQPLVGTGG  300
PGPGLPPPQP IDLSSSIFQS TRFDQDYTPN HGQDVNPNPS PNFNSTGGLG SPHISATALL  360
QKAAQMGATM SNKSSTVSAA ATGPSPTMLM RPHQFHVSAA AVESVSNNTT DVGLNLSSSE  420
DLTTGFLNSL TSYGNKAATI TVAAAAATAT VSPLTSAPSP TSFLMTSFSS ANTTGFEGSN  480
FEDEFGGIGI LNSKKGNDAN DDMTKDFLGL RPLSHSDIFN IAGLVNTTSN ENQSQNHKTW  540
QS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1126138KLKQRTSKEIRKK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009774627.10.0PREDICTED: zinc finger protein NUTCRACKER-like
RefseqXP_009774629.10.0PREDICTED: zinc finger protein NUTCRACKER-like
RefseqXP_016433584.10.0PREDICTED: protein indeterminate-domain 7-like
RefseqXP_016433590.10.0PREDICTED: protein indeterminate-domain 7-like
SwissprotQ8H1F51e-127IDD7_ARATH; Protein indeterminate-domain 7
TrEMBLM0ZR950.0M0ZR95_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000063850.0(Solanum tuberosum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G55110.11e-112indeterminate(ID)-domain 7